Package index
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ggchord() - ggchord: layered multi-sequence alignment chord diagrams for ggplot2
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coord_chord() - Chord diagram coordinate system
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get_chord_layout() - Get the chord layout from the package environment
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`+`(<ggchord>) - Combine a ggchord plot with ggplot2 objects
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ggplotly(<ggchord>) - Convert a ggchord plot to a plotly object
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as.data.frame(<ggchord_validation>) - Coerce a validation result to a flat data.frame
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print(<ggchord_clean>) - Print a cleaned ggchord data result
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seq_data_example - Example sequence data
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ribbon_data_example - Example alignment data
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gene_data_example - Example gene annotation data
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geom_seq() - Add a sequence arc layer
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geom_ribbon() - Add an alignment ribbon layer
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geom_gene() - Add a gene arrow layer
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geom_gene_label() - Add a gene label layer
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geom_gene_label_repel() - Add a repelled gene label layer (ggrepel-style)
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geom_axis() - Add an axis layer
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geom_seq_label() - Add a sequence label layer
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geom_seq_region() - Highlight regions along sequence arcs
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geom_ribbon_highlight() - Highlight selected alignment ribbons
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geom_feature() - Draw generic genomic features
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read_fasta_lengths() - Read one or more FASTA files into seq_data format
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read_blast() - Read one or more BLAST tabular output files into ribbon_data format
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read_gff3() - Read one or more GFF3 files into gene_data format
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validate_ggchord_data() - Validate ggchord input data before plotting
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clean_ggchord_data() - Clean ggchord input data with explicit, report-driven policies
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filter_ggchord_ribbons() - Filter alignment ribbons before plotting
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deduplicate_ggchord_ribbons() - Deduplicate alignment ribbons
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merge_ggchord_ribbons() - Merge adjacent or overlapping alignment blocks of the same sequence pair